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Table 4 Ratios of differentially expressed genes related to oxidative processes

From: Transcriptome-based identification of antioxidative gene expression after fish oil supplementation in normo- and dyslipidemic men

Regulated genes

Gene symbol

Entrez_ID

RefSeq_ID

Dyslipidemic

Normolipidemic

    

Ratio t4h : t0

Ratio t1 : t0

Ratio t12 : t0

Ratio t4h : t0

Ratio t1 : t0

Ratio t12 : t0

Gluthatione metabolism

Glutathione peroxidase 1

GPX1

2876

NM_000581.2

-

-

-

-

-

−2.48 3

   

NM_201397.1

      

Glutathione S-transferase Mu 3

GSTM3

2947

NM_000849.4

−2.30 1

4.12 2

2.47 2

-

-

-

Glutathione synthetase

GSS

2937

NM_000178.2

−7.97 1

-

-

-

-

-

Phospholipid hydroperoxide glutathione peroxidase, mitochondrial

GPX4

2879

NM_001039848.1

-

−3.74 1

-

-

-

-

   

NM_001039847.1

      
   

NM_002085.3

      

Glutathione S-transferase P

GSTP1

2950

NM_000852.3

-

−2.00 2

-

-

-

-

Gamma-glutamyltransferase 5

GGTLA1

2687

NM_001099782.1

3.44 1

14.90 1

7.98 1

-

-

-

   

NM_001099781.1

      
   

NM_004121.2

      

Glutathione peroxidase 3 (plasma)

GPX3

2878

NM_002084.3

-

-

−2.15 1

-

-

-

Glutathione reductase

GSR

2936

NM_000637.2

-

-

2.38 3

-

-

-

Matrix metalloproteinases

Matrix metalloproteinase-25

MMP25

64386

NM_022468.4

-

-

-

2.14 2

-

−2.30 1

Metalloproteinase inhibitor 2

TIMP2

7077

NM_003255.4

-

−4.18 1

−2.29 1

-

-

-

stromelysin-1

MMP3

4314

NM_002422.3

-

-

−2.17 1

-

-

-

72 kDa type IV collagenase

MMP2

4313

NM_001127891.1

-

−3.91 1

−6.16 1

-

-

-

   

NM_004530.4

      

Cytochrom P450 enzymes

Cytochrome P450 1A2

CYP1A2

1544

NM_000761.3

-

-

-

-

-

−7.74 2

Cytochrome P450 2A7

CYP2A7

1548

NM_000762.5

-

−2.46 1

-

 

−2.42 1

−2.70 1

Cytochrome P450 4X1

CYP4X1

260293

NM_178033.1

-

−5.66 1

−11.35 1

-

-

-

Cytochrome P450 26A1

CYP26A1

1592

NM_057157.2

2.87 1

-

-

-

-

-

   

NM_000783.3

      

Cytochrome P450 2B6

CYP2B6

1555

NM_000767.4

2.60 1

-

-

-

-

-

Cytochrome P450 4F12

CYP4F12

66002

NM_023944.3

2.46 1

-

-

-

-

-

Cholesterol side-chain cleavage enzyme, mitochondrial

CYP11A1

1583

NM_001099773.1

−2.30 1

−2.78 1

−2.79 1

-

-

-

   

NM_000781.2

      

Cytochrome P450 26B1

CYP26B1

56603

NM_019885.2

−3.11 1

-

-

-

-

-

Cytochrome P450 2C19

CYP2C19

1557

NM_000769.1

−7.48 1

-

-

-

-

-

Steroid 17-alpha-hydroxylase/ 17,20 lyase

CYP17A1

1586

NM_000102.3

−7.96 1

-

−4.19 1

-

-

-

Cytochrome P450 2J2

CYP2J2

1573

NM_000775.2

-

-3.54 1

-

-

-

-

Cytochrome P450 27C1

CYP27C1

339761

NM_001001665.3

-

−4.46 1

−3.41 1

-

-

-

Cytochrome P450 2A13

CYP2A13

1553

NM_000766.3

-

−4.49 1

−8.90 1

   

Others

Extracellular superoxide dismutase [Cu-Zn]

SOD3

6649

NM_003102.2

-

-

4.70 3

-

-

2.91 3

Catalase

CAT

847

NM_001752.2

-

13.15 1

8.90 1

-

-

-

Heme oxygenase 1

HMOX1

3162

NM_002133.1

-

−8.57 1

−17.52 1

-

-

-

Heme oxygenase 2

HMOX2

3163

NM_001127204.1

-

−11.44 1

7.84 1

-

-

-

   

NM_001127205.1

      
   

NM_001127206.1

      
   

NM_002134.3

      

Epoxide hydrolase 1

EPHX1

2052

NM_000120.3

-

-

3.14 2

−2.24 2

-

2.22 2

   

NM_001136018.2

      

Arachidonate 5-lipoxygenase- activating protein

ALOX5AP

241

NM_001629.2

-

-

6.97 1

-

-

-

Nitric oxide synthase, endothelial

NOS3

4846

NM_000603.4

-

−4.22 1

−2.55 1

-

-

-

Nitric oxide synthase, inducible

NOS2

4843

NM_000625.4

-

−8.11 1

−4.77 1

-

-

-

Nitric oxide synthase-interacting protein

NOSIP

51070

NM_015953.3

-

-

-

-

-

3.64 1

NADPH oxidase 1

NOX1

27035

NM_013955.2

-

-

2.06 1

-

-

-

   

NM_007052.4

      
  1. Expression ratios were displayed for genes which were differentially expressed after four hours (t4h), one week (t1) and twelve weeks (t12) of fish oil supplementation in normolipidemic and dyslipidemic men.
  2. - no regulation.
  3. 1 slightly significant regulation; p = 0.05.
  4. 2 significant regulation; p < 0.05.
  5. 3 highly significant regulation; p < 0.01.