Table 1 Bacteria used in this study
From: Bacterial metabolites directly modulate farnesoid X receptor activity
Strain | Accession number | Isolation source | Taxonomic assignment | 16S rRNA sequence similarity (%) |
|---|---|---|---|---|
W1 | Â | Culture collections | Lactobacillus casei [NBRC 15883] | - |
W2 | Â | Culture collections | Lactobacillus fermentum [NBRC 15885] | - |
W3 | Â | Culture collections | Lactobacillus plantarum [NBRC 15891] | - |
W4 | Â | Culture collections | Lactococcus lactis [NBRC 100933] | - |
W5 | LC061609 | Dairy foods | Lactobacillus gasseri [FJ557004] | 99 |
W6 | LC061610 | Dairy foods | Lactobacillus delbrueckii [CP000156] | 99 |
W7 | LC061611 | Dairy foods | Streptococcus thermophilus [FR875178] | 99 |
W8 | LC061612 | Dairy foods | Lactobacillus helveticus [CP011386] | 99 |
W9 | LC061613 | Dairy foods | Lactobacillus gasseri [FJ557004] | 99 |
W10 | LC061614 | Dairy foods | Streptococcus thermophilus [FR875178] | 99 |
W11 | LC061615 | Dairy foods | Lactobacillus reuteri [EU722746] | 99 |
W12 | LC033789 | Dairy foods | Lactobacillus helveticus [HM218413] | 99 |
W13 (WU 12)a | AB932539 | Human feces | Bifidobacterium bifidum [AP012323] | 100 |
W14 (WU 16)a | AB932540 | Human fces | Bifidobacterium longum [FP929034] | 100 |
W15 (WU 22)a | AB932542 | Human feces | Bifidobacterium adolescentis [CP010437] | 99 |
W16 (WU 57)a | AB932544 | Human feces | Bifidobacterium bifidum [KJ160509] | 99 |
W18 | LC033790 | Human feces | Bacteroides dorei [EU722737] | 99 |
W19 | LC033791 | Human feces | Eubacterium limosum [AB638446] | 99 |
W20 | LC033792 | Human feces | Bacteroides sp.W20 [EU728710] | 99 |
W21 | LC033793 | Human feces | Bacteroides fragilis [AB618792] | 98 |
W22 | LC033794 | Human feces | Ruminococcus sp.W22 [FJ611794] | 99 |
W23 | LC033795 | Human feces | Clostridiales bacterium W23 [HQ452859] | 98 |
W24 | LC033796 | Human feces | Bacteroides uniformis [AB247142] | 99 |
W25 | LC033797 | Mouse feces | Parabacteroides distasonis [AB238924] | 98 |
W26 | LC033798 | Mouse feces | Bacteroides acidifaciens [AB510696] | 97 |
W27 | LC033799 | Mouse feces | Bacteroides thetaiotaomicron [AE015928] | 97 |
W28 | LC033800 | Mouse feces | Lactobacillus johnsonii [FN298497] | 99 |
W29 | LC033801 | Mouse feces | Lactobacillus reuteri [KR492886] | 97 |
W30 | LC033802 | Mouse feces | Lactobacillus animalis [AB911535] | 98 |
W31 | LC033803 | Mouse feces | Bacteroides sartorii [AB572597] | 98 |
W32 | LC033804 | Mouse feces | Bacteroides sp.W32 [AB599946] | 99 |
W33 | LC033805 | Mouse feces | Parabacteroides goldsteinii [AB547650] | 99 |
W34 | LC033806 | Mouse feces | Enterococcus faecalis [FJ378702] | 99 |
W35 | LC033807 | Human feces | Enterococcus durans [AJ276354] | 99 |
W36 (WU 27)a | AB932524 | Human feces | Enterococcus raffinosus [AF061003] | 99 |
W37 (WU 65)a | AB932534 | Human feces | Enterococcus cecorum [AF061009] | 99 |
W38 (WU 76)a | AB932546 | Human feces | Enterococcus avium [DQ779961] | 100 |
W39 | LC033808 | Human feces | Enterococcus faecium [FJ378690] | 99 |